GitHub stats for 2021/03/14 - 2021/05/05 (tag: 1.4.0) These lists are automatically generated, and may be incomplete or contain duplicates. The following 11 authors contributed 153 commits. Ariel Rokem Bramsh Qamar Chandio David Romero-Bascones Eleftherios Garyfallidis Etienne St-Onge Felix Liu Gabriel Girard John Kruper Nasim Anousheh Serge Koudoro Shreyas Fadnavis We closed a total of 89 issues, 28 pull requests and 61 regular issues;
this is the full list (generated with the script
Pull Requests (28): PR #2367: [Upcoming] Release 1.4.1 PR #2387: added all examples of CST and updated AFQ file name PR #2386: Adding CST_L back in Bundle Segmentation Tutorial PR #2375: Expanding Bundle Segmentation Tutorial PR #2382: Updated docs for using P2S optimally PR #2385: RF: Standardize the argument name for the number of threads/cores PR #2384: RF - Removed deprecated tracking code PR #2351: Updating Vec2vec_rotmat to deal with numerical issues PR #2381: Adds the NIPY code of conduct to our repo. PR #2371: [Fix] Add “None” options in the CLIs PR #2352: RF: configure num_threads==-1 as the value to use all cores PR #2373: [FIX] warning if not the same number of points PR #2372: Expand patch radius if input is int PR #2348: RF: Use new name for this function. PR #2365: [DOC]: Change defaults in Patch2Self example PR #2349: [ENH] Allow for other statistics, like median, in afq_profile PR #2350: [FIX] Use npy_intp variables instead of int and size_t to iterate over numpy arrays PR #2346: [MNT] Update and fix Cython warnings and use cnp.PyArray_DATA wherever possible PR #2347: Replacing Data in NLMeans Tutorial PR #2340: [FIX] reactivate codecov PR #2344: [FIX] Tractogram Header in RecoBundles Tutorial PR #2339: [FIX] Cleanup deprecated np.float, np.bool, np.int PR #1648: Mesh seeding (surface) PR #2337: BF: Change patch2self defaults. PR #2333: Add __str__ to GradientTable PR #2335: RF: Replaces deprecated basis by its new name. PR #2332: [FIX] fix tests for all new deprecated functions Issues (61): #2375: Expanding Bundle Segmentation Tutorial #1973: Recobundles documentation #2382: Updated docs for using P2S optimally #2385: RF: Standardize the argument name for the number of threads/cores #2377: RF: standardize the argument name for the number of threads/cores #2384: RF - Removed deprecated tracking code #2351: Updating Vec2vec_rotmat to deal with numerical issues #2381: Adds the NIPY code of conduct to our repo. #2380: Community and governance #2371: [Fix] Add “None” options in the CLIs #2300: NF: Add “None” options in the CLIs #2352: RF: configure num_threads==-1 as the value to use all cores #2373: [FIX] warning if not the same number of points #2320: RecoBundles distances #2372: Expand patch radius if input is int #2341: Allow use of all threads in the gibbs ringing workflow #2348: RF: Use new name for this function. #2353: How to create tractogram from a multi-shell data for RecoBundles #1302: [DOC] cython (pyx) files are not parsed #366: Some doc missing #2365: [DOC]: Change defaults in Patch2Self example #1672: Dipy Segmentation fault when visualizing #1444: Move general registration tools into own package? #562: Multiprocessing the tensor reconstruction #13: Coordinate maps stuff #2324: Dipy for VR/AR #2345: Saving and/or importing nonlinear warps #2349: [ENH] Allow for other statistics, like median, in afq_profile #2350: [FIX] Use npy_intp variables instead of int and size_t to iterate over numpy arrays #423: Use npy_intp variables instead of int and size_t to iterate over numpy arrays #837: Should we enforce float32 in tractography results? #636: Get a standard interface for the functions using the noise variance #861: open mp defaults to one core, is that a good idea? #2346: [MNT] Update and fix Cython warnings and use cnp.PyArray_DATA wherever possible #1895: Cython warnings #545: Use cnp.PyArray_DATA wherever possible #2347: Replacing Data in NLMeans Tutorial #1847: Replacing Data in NLMeans Tutorial #2340: [FIX] reactivate codecov #1872: Did we lose our coverage reporting? #1646: Fetcher should not be under coverage #1635: Track from mesh #2344: [FIX] Tractogram Header in RecoBundles Tutorial #2309: Tractogram Header in RecoBundles Tutorial #2334: Aphysical signal after running patch2self #1873: ERROR while import data #2343: Missing Python 3.9 wheels #1996: Documentation not being rendered correctly #2311: Accuracy of DKI measures #2274: DKI metrics’ accuracy #2339: [FIX] Cleanup deprecated np.float, np.bool, np.int #1648: Mesh seeding (surface) #1675: WIP: Integer indices #2316: TranslationTransform2D Exact X-Y Shift #2337: BF: Change patch2self defaults. #2333: Add __str__ to GradientTable #2331: gtab.info does not print anything #2335: RF: Replaces deprecated basis by its new name. #2332: [FIX] fix tests for all new deprecated functionsRelease notes for DIPY version 1.4.1
tools/github_stats.py):